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Creators/Authors contains: "Bassiouni, Maoya"

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  1. This record includes software and data used to compute shared information between streamwater microbial taxa and hydrologic metrics for the article: URycki, D. R., Bassiouni, M., Good, S. P., Crump, B. C., & Li, B. (2022). The streamwater microbiome encodes hydrologic data across scales. Science of The Total Environment, 157911. https://doi.org/10.1016/j.scitotenv.2022.157911 Abstract: Many fundamental questions in hydrology remain unanswered due to the limited information that can be extracted from existing data sources. Microbial communities constitute a novel type of environmental data, as they are comprised of many thousands of taxonomically and functionally diverse groups known to respond to both biotic and abiotic environmental factors. As such, these microscale communities reflect a range of macroscale conditions and characteristics, some of which also drive hydrologic regimes. Here, we assess the extent to which streamwater microbial communities (as characterized by 16S gene amplicon sequence abundance) encode information about catchment hydrology across scales. We analyzed 64 summer streamwater DNA samples collected from subcatchments within the Willamette, Deschutes, and John Day river basins in Oregon, USA, which range 0.03–29,000 km2 in area and 343–2334 mm/year of precipitation. We applied information theory to quantify the breadth and depth of information about common hydrologic metrics encoded within microbial taxa. Of the 256 microbial taxa that spanned all three watersheds, we found 9.6 % (24.5/256) of taxa, on average, shared information with a given hydrologic metric, with a median 15.6 % (range = 12.4–49.2 %) reduction in uncertainty of that metric based on knowledge of the microbial biogeography. All of the hydrologic metrics we assessed, including daily discharge at different time lags, mean monthly discharge, and seasonal high and low flow durations were encoded within the microbial community. Summer microbial taxa shared the most information with winter mean flows. Our study demonstrates quantifiable relationships between streamwater microbial taxa and hydrologic metrics at different scales, likely resulting from the integration of multiple overlapping drivers of each. Streamwater microbial communities are rich sources of information that may contribute fresh insight to unresolved hydrologic questions. This record can also be found on Github: https://github.com/uryckid/Microbial-Mutual-Information 
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  2. Abstract In a complex ecohydrologic system, vegetation and soil variables combine to dictate heat fluxes, and these fluxes may vary depending on the extent to which drivers are linearly or nonlinearly interrelated. From a modeling and causality perspective, uncertainty, sensitivity, and performance measures all relate to how information from different sources “flows” through a model to produce a target, or output. We address how model structure, broadly defined as a mapping from inputs to an output, combines with source dependencies to produce a range of information flow pathways from sources to a target. We apply information decomposition, which partitions reductions in uncertainty into synergistic, redundant, and unique information types, to a range of model cases. Toy models show that model structure and source dependencies both restrict the types of interactions that can arise between sources and targets. Regressions based on weather data illustrate how different model structures vary in their sensitivity to source dependencies, thus affecting predictive and functional performance. Finally, we compare the Surface Flux Equilibrium theory, a land‐surface model, and neural networks in estimating the Bowen ratio and find that models trade off information types particularly when sources have the highest and lowest dependencies. Overall, this study extends an information theory‐based model evaluation framework to incorporate the influence of source dependency on information pathways. This could be applied to explore behavioral ranges for both machine learning and process‐based models, and guide model development by highlighting model deficiencies based on information flow pathways that would not be apparent based on existing measures. 
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